micrOS
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Example
micrOS
Preprocess Data
Select OTU table:
Select Tag file:
Taxonomy Level:
Order
Family
Genus
Specie
Normalization:
Log
Relative
Dimension Reduction:
PCA
ICA
None
Taxonomy Group:
Mean
Sum
sub PCA
Epsilon:
Number of Components:
Taxonomy Level For Frequency Plot:
Class
Phylum
Order
Z Scoring following log normalization:
Row
Column
Both
None
Z Scoring following relative frequency:
No
Yes
MIP-MLP
iMic
miMic
SAMBA
iMic HyperParameters
l1_loss:
weight_decay:
lr:
batch_size:
activation:
elu
relu
tanh
dropout:
kernel_size_a:
kernel_size_b:
stride:
padding:
padding_2:
kernel_size_a_2:
kernel_size_b_2:
stride_2:
channels:
channels_2:
linear_dim_divider_1:
linear_dim_divider_2:
input_dim:
A priori Nested ANOVA & Post hoc Test
Eval Mode:
man
core
cat
sis:
fdr_bh
bonferroni
no
Correct First:
True
False
p value:
Choose a threshold for the statistics
for the edges of the interaction network
SAMBA HyperParameters
cutoff:
metric:
sam
mge
d1
d2
d3
LOCATE HyperParameters
metab:
weight_decay_rep:
weight_decay_dis:
lr_rep:
lr_dis:
rep_coef:
dis_coef:
dropout_:
activation_rep:
elu
relu
tanh
activation_dis:
elu
relu
tanh
neurons:
neurons2:
representation_size:
test_size:
Calculate